Stem-loop sme-mir-2e

Accession

MI0010938

Description

Schmidtea mediterranea sme-mir-2e precursor miRNA

Literature search

1 open access papers mention sme-mir-2e
(2 sentences)

Sequence

129 reads, 3.0 reads per million, 19 experiments

uauaggucagaugAAACCUAGUUGGUUGCGAUAUGUugccauucaauaccaUAUCACAGCUUGCUCUAGGUUUaaucucgacuuauuuuucucauc
.(((((((((((.((((((((..(((((.((((((.((........)).)))))).)))))....)))))))).)))).)))))))..........

Structure

---------u       -    g        --UU     C      U  cca 
          auagguc agau AAACCUAG    GGUUG GAUAUG ug   u
          ||||||| |||| ||||||||    ||||| |||||| ||    
          uauucag ucua UUUGGAUC    UCGAC CUAUac au   u
cuacucuuuu       c    a        UCGU     A      c  aac 

Annotation confidence Not enough data

Genome context

gb|NNSW01000025.1|: 5887717-5887812 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from sme-mir-2e

Mature sme-miR-2e-5p

• Accession: MIMAT0011400
• Description: Schmidtea mediterranea sme-miR-2e-5p mature miRNA
• Sequence: 14 - AAACCUAGUUGGUUGCGAUAUGU - 36
• Evidence: experimental ; Illumina [1]

Mature sme-miR-2e-3p

• Accession: MIMAT0011401
• Description: Schmidtea mediterranea sme-miR-2e-3p mature miRNA
• Sequence: 52 - UAUCACAGCUUGCUCUAGGUUU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491