Stem-loop sme-mir-2157

Accession

MI0010790

Description

Schmidtea mediterranea sme-mir-2157 precursor miRNA

Sequence

uuaaaggugcagucaaauuuUGAGUAUUGCAUCAAGAACCGAauguuaauauCAGUUUUUGAUGAAUUACUUAAauuaagcuccucuaaucucuu
(((.(((.((........((((((((...((((((((((.((((....)).)).))))))))))...))))))))....)).))).)))......

Structure

------   a   u  agucaaau        UUG          C  -  g 
      uua agg gc        uuUGAGUA   CAUCAAGAAC GA au u
      ||| ||| ||        ||||||||   |||||||||| || ||  
      aau ucc cg        aAAUUCAU   GUAGUUUUUG Cu ua u
uucucu   c   u  ----aauu        UAA          A  a  a 

Annotation confidence Not enough data

Genome context

Contig23847: 7335-7429 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-2157

Mature sme-miR-2157-5p

• Accession: MIMAT0011250
• Description: Schmidtea mediterranea sme-miR-2157-5p mature miRNA
• Sequence: 21 - UGAGUAUUGCAUCAAGAACCGA - 42
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2157-3p

• Accession: MIMAT0012148
• Description: Schmidtea mediterranea sme-miR-2157-3p mature miRNA
• Sequence: 53 - CAGUUUUUGAUGAAUUACUUAA - 74
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491