Stem-loop sme-mir-754a

Accession

MI0005180

Description

Schmidtea mediterranea sme-mir-754a precursor miRNA

Sequence

1379 reads, 29.0 reads per million, 28 experiments

acccagcauGUUGCUUGGGGUUAUUACUAUauuuauuaauauaGUUUUAUCUUCAAGCAAUAUcagaugugga
.((((..(((((((((((((.((..((((((((....))))))))..)).)))))))))))))....)).)).

Structure

a  -  --gc             U  UU        u 
 cc ca    auGUUGCUUGGGG UA  ACUAUauu a
 || ||    ||||||||||||| ||  ||||||||  
 gg gu    UAUAACGAACUUC AU  UGauauaa u
a  u  agac             U  UU        u 

Annotation confidence Medium

Genome context

gb|NNSW01000050.1|: 3677239-3677311 [+]

Mature sme-miR-754a-5p

• Accession: MIMAT0004021
• Description: Schmidtea mediterranea sme-miR-754a-5p mature miRNA
• Sequence: 10 - GUUGCUUGGGGUUAUUACUAU - 30
• Evidence: experimental ; cloned [1], Illumina [2-3], 454 [3]

Mature sme-miR-754a-3p

• Accession: MIMAT0053623
• Description: Schmidtea mediterranea sme-miR-754a-3p mature miRNA
• Sequence: 44 - GUUUUAUCUUCAAGCAAUAU - 63
• Evidence: experimental ; cloned [1], Illumina [2-3], 454 [3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491