Stem-loop sme-mir-2160-2

Accession

MI0010948

Description

Schmidtea mediterranea sme-mir-2160-2 precursor miRNA

Literature search

1 open access papers mention sme-mir-2160-2
(3 sentences)

Sequence

cuuugugauuaaauaUGGCGCUUAUGUGUAGAACCGGuuguacuauauuuuuaaacuGGUUUUUCAUGUAAGAGUCCaaauaguaucacaaaa
.((((((((......((((.((((((((.((((((((((..............)))))))))).)))))))).).)))......)))))))).

Structure

c        uaaaua   - G        U          guacua 
 uuugugau      UGG C CUUAUGUG AGAACCGGuu      u
 ||||||||      ||| | |||||||| ||||||||||       
 aaacacua      aCC G GAAUGUAC UUUUGGucaa      a
a        ugauaa   U A        U          auuuuu 

Annotation confidence Not enough data

Genome context

Contig31371: 1017-1109 [+]

Mature sme-miR-2160-5p

• Accession: MIMAT0011254
• Description: Schmidtea mediterranea sme-miR-2160-5p mature miRNA
• Sequence: 16 - UGGCGCUUAUGUGUAGAACCGG - 37
• Evidence: experimental ; Illumina [1-2], 454 [2]

Mature sme-miR-2160-2-3p

• Accession: MIMAT0013776
• Description: Schmidtea mediterranea sme-miR-2160-2-3p mature miRNA
• Sequence: 58 - GGUUUUUCAUGUAAGAGUCC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491