Stem-loop sme-mir-124b

Accession

MI0005158

Description

Schmidtea mediterranea sme-mir-124b precursor miRNA

Literature search

2 open access papers mention sme-mir-124b
(7 sentences)

Sequence

guauccaugaaaauuUGCAUUUACAACGUGUCUUUAGUucaugugacacUAAGGCACGCGGUGAAUGCUGAauuaaaugguuua
....((((...(((((((((((((..((((((((.(((((....)).)))))))))))..)))))))).)))))..))))....

Structure

guau    gaa     -        AA        U   -  a 
    ccau   aauuU GCAUUUAC  CGUGUCUU AGU uc u
    ||||   ||||| ||||||||  |||||||| ||| ||  
    ggua   uuaAG CGUAAGUG  GCACGGAA Uca ag g
auuu    -aa     U        GC        -   c  u 

Annotation confidence Not enough data

Genome context

Contig12040: 20049-20132 [-]

Mature sme-miR-124b-5p

• Accession: MIMAT0012113
• Description: Schmidtea mediterranea sme-miR-124b-5p mature miRNA
• Sequence: 16 - UGCAUUUACAACGUGUCUUUAGU - 38
• Evidence: experimental ; 454 [2], Illumina [2-3]

Mature sme-miR-124b-3p

• Accession: MIMAT0003993
• Description: Schmidtea mediterranea sme-miR-124b-3p mature miRNA
• Sequence: 50 - UAAGGCACGCGGUGAAUGCUGA - 71
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491