Stem-loop sme-mir-1a

Accession

MI0005128

Description

Schmidtea mediterranea sme-mir-1a precursor miRNA

Sequence

443675 reads, 9759.0 reads per million, 28 experiments

agcgaGCAUUUUUCGAGGCAUUUCAUAgagucaaaugaaaauaaaccugUGGAAUGUCGAGAAAUAUGCAUgcu
((((.((((.((((..((((((((((((.((.............))))))))))))))..)))).)))).))))

Structure

    a    U    GA            a  caaau 
agcg GCAU UUUC  GGCAUUUCAUAg gu     g
|||| |||| ||||  |||||||||||| ||     a
ucgU CGUA AAAG  CUGUAAGGUguc ca     a
    A    U    AG            -  aauaa 

Annotation confidence High

Genome context

gb|NNSW01000005.1|: 4406436-4406509 [+]

Mature sme-miR-1a-5p

• Accession: MIMAT0012090
• Description: Schmidtea mediterranea sme-miR-1a-5p mature miRNA
• Sequence: 6 - GCAUUUUUCGAGGCAUUUCAUA - 27
• Evidence: experimental ; 454 [2], Illumina [2-3]

Mature sme-miR-1a-3p

• Accession: MIMAT0003960
• Description: Schmidtea mediterranea sme-miR-1a-3p mature miRNA
• Sequence: 50 - UGGAAUGUCGAGAAAUAUGCAU - 71
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491