Stem-loop sme-mir-2161

Accession

MI0010795

Description

Schmidtea mediterranea sme-mir-2161 precursor miRNA

Sequence

uuuuccuuugucuguaauaGUAUCUUUUUUAUUACGUACAAAaugcuugcuuagguugacauuuUGUGCGUAGUAAUAGAGGUAUCaauauagucaauuuaucguc
.......(((.(((((...((((((((.(((((((((((((((((...((....))...))))))))))))))))).))))))))...))))).))).........

Structure

--uuuuccu   u     aua        U                 cuu  u 
         uug cugua   GUAUCUUU UUAUUACGUACAAAaug   gc u
         ||| |||||   |||||||| |||||||||||||||||   ||  
         aac gauau   UAUGGAGA AAUGAUGCGUGUuuuac   ug a
cugcuauuu   u     aaC        U                 agu  g 

Annotation confidence Not enough data

Genome context

Contig33: 107534-107639 [+]

Mature sme-miR-2161-5p

• Accession: MIMAT0012152
• Description: Schmidtea mediterranea sme-miR-2161-5p mature miRNA
• Sequence: 20 - GUAUCUUUUUUAUUACGUACAAA - 42
• Evidence: experimental ; Illumina [1-2]

Mature sme-miR-2161-3p

• Accession: MIMAT0011255
• Description: Schmidtea mediterranea sme-miR-2161-3p mature miRNA
• Sequence: 65 - UGUGCGUAGUAAUAGAGGUAUC - 86
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491