Stem-loop sme-mir-755

Accession

MI0005181

Description

Schmidtea mediterranea sme-mir-755 precursor miRNA

Sequence

201898 reads, 3642.0 reads per million, 28 experiments

uuucuguAGUGGAGCUAUUGUAUUUCACCgugguuggcuaucgUGAGAUUCAAUUACUCCAACUACgauuua
....((((((((((..((((.(((((((.((((....)))).))))))).))))..)))).)))))).....

Structure

-uuuc      -    CU    U       C    u 
     uguAGU GGAG  AUUG AUUUCAC gugg u
     |||||| ||||  |||| ||||||| ||||  
     gCAUCA CCUC  UAAC UAGAGUg uauc g
auuua      A    AU    U       c    g 

Annotation confidence High

Genome context

gb|NNSW01000064.1|: 240460-240531 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-755

Mature sme-miR-755-5p

• Accession: MIMAT0004022
• Description: Schmidtea mediterranea sme-miR-755-5p mature miRNA
• Sequence: 8 - AGUGGAGCUAUUGUAUUUCACC - 29
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

Mature sme-miR-755-3p

• Accession: MIMAT0012126
• Description: Schmidtea mediterranea sme-miR-755-3p mature miRNA
• Sequence: 44 - UGAGAUUCAAUUACUCCAACUAC - 66
• Evidence: experimental ; 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491