Stem-loop sme-mir-61a

Accession

MI0005148

Description

Schmidtea mediterranea sme-mir-61a precursor miRNA

Sequence

1033171 reads, 19136.0 reads per million, 28 experiments

uuuuuagaauagaaacucuugauacAGUUUGUGAGUUUCUAGGCAUAUagauuuuucuaUGACUAGAAAGUUCACUUACUGUUGuacgaguuuuaaacuucauu
...........(((((((.((..(((((..((((((((((((...((((((....)))))).))))))).)))))..)))))..)).)))))))..........

Structure

uuuuuagaaua       u  au     UU     -       GCA      u 
           gaaacuc ug  acAGU  GUGAG UUUCUAG   UAUaga u
           ||||||| ||  |||||  ||||| |||||||   ||||||  
           uuuugag au  UGUCA  CACUU AAAGAUC   GUaucu u
-uuacuucaaa       c  GU     UU     G       --A      u 

Annotation confidence High

Genome context

gb|NNSW01000252.1|: 319021-319124 [-]

Mature sme-miR-61a-5p

• Accession: MIMAT0012105
• Description: Schmidtea mediterranea sme-miR-61a-5p mature miRNA
• Sequence: 26 - AGUUUGUGAGUUUCUAGGCAUAU - 48
• Evidence: experimental ; 454 [2], Illumina [2-3]

Mature sme-miR-61a-3p

• Accession: MIMAT0003983
• Description: Schmidtea mediterranea sme-miR-61a-3p mature miRNA
• Sequence: 60 - UGACUAGAAAGUUCACUUACUGUUG - 84
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491