Stem-loop sme-mir-2158

Accession

MI0010791

Description

Schmidtea mediterranea sme-mir-2158 precursor miRNA

Sequence

12326 reads, 227.0 reads per million, 28 experiments

ggaaaguaauuuuaauauuuUGAGUAUUUUUUCGUAUACCGAAcagaucaucguugacuuuCGGUAACGAAGAAUACUUGGAauugagaaauuuauucgucg
.(((...((((((...(((((((((((((((.(((.(((((((.((.(((....))))))))))))))))))))))))))))))...))))))..)))....

Structure

---g   agu      aau               U   A       c  a   u 
    gaa   aauuuu   auuuUGAGUAUUUUU CGU UACCGAA ag uca c
    |||   ||||||   ||||||||||||||| ||| ||||||| || |||  
    cuu   uuaaag   uaAGGUUCAUAAGAA GCA AUGGCuu uc agu g
gcug   -au      agu               -   -       -  -   u 

Annotation confidence High

Genome context

gb|NNSW01000007.1|: 5199065-5199166 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-2158

Mature sme-miR-2158-5p

• Accession: MIMAT0011251
• Description: Schmidtea mediterranea sme-miR-2158-5p mature miRNA
• Sequence: 21 - UGAGUAUUUUUUCGUAUACCGAA - 43
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2158-3p

• Accession: MIMAT0012149
• Description: Schmidtea mediterranea sme-miR-2158-3p mature miRNA
• Sequence: 62 - CGGUAACGAAGAAUACUUGGA - 82
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491