Stem-loop sme-mir-277c

Accession

MI0005170

Description

Schmidtea mediterranea sme-mir-277c precursor miRNA

Literature search

1 open access papers mention sme-mir-277c
(2 sentences)

Sequence

aucauuuauauuaAUCAUAUCAGAUUUGCAUUAUUauuaugaauuaaacaucaaUAAAUGCAUUAUCUGGUAUGAUauuugaaaugau
(((((((......((((((((((((.((((((..(((((((.......))).))))))))))..)))))))))))).....)))))))

Structure

       auauua            -U      AU    -   aa 
aucauuu      AUCAUAUCAGAU  UGCAUU  Uauu aug  u
|||||||      ||||||||||||  ||||||  |||| |||  u
uaguaaa      UAGUAUGGUCUA  ACGUAA  AUaa uac  a
       -guuua            UU      --    c   aa 

Annotation confidence Not enough data

Genome context

Contig520: 104019-104106 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-277c

Mature sme-miR-277c-5p

• Accession: MIMAT0012120
• Description: Schmidtea mediterranea sme-miR-277c-5p mature miRNA
• Sequence: 14 - AUCAUAUCAGAUUUGCAUUAUU - 35
• Evidence: experimental ; 454 [2], Illumina [2-3]

Mature sme-miR-277c-3p

• Accession: MIMAT0004010
• Description: Schmidtea mediterranea sme-miR-277c-3p mature miRNA
• Sequence: 55 - UAAAUGCAUUAUCUGGUAUGAU - 76
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491