Stem-loop sme-mir-1992

Accession

MI0010783

Description

Schmidtea mediterranea sme-mir-1992 precursor miRNA

Literature search

1 open access papers mention sme-mir-1992
(1 sentences)

Sequence

14651 reads, 286.0 reads per million, 28 experiments

uuaugaaauaaagaauuUGUCUUGAACAACUGCUUAUGaugaaaaaaugucaUCAGCAGUUGUUCCAUUGACaaguuauauuucauugauau
..((((((((...((((((((..(((((((((((.(((((........))))).)))))))))))....)))))))).))))))))......

Structure

----uu        aag        --UU           U     gaa 
      augaaaua   aauuUGUC    GAACAACUGCU AUGau   a
      ||||||||   ||||||||    ||||||||||| |||||    
      uacuuuau   uugaaCAG    CUUGUUGACGA Uacug   a
uauagu        --a        UUAC           C     uaa 

Annotation confidence Medium

Genome context

gb|NNSW01000030.1|: 1784489-1784580 [+]

Mature sme-miR-1992-5p

• Accession: MIMAT0012142
• Description: Schmidtea mediterranea sme-miR-1992-5p mature miRNA
• Sequence: 18 - UGUCUUGAACAACUGCUUAUG - 38
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-1992-3p

• Accession: MIMAT0011243
• Description: Schmidtea mediterranea sme-miR-1992-3p mature miRNA
• Sequence: 53 - UCAGCAGUUGUUCCAUUGAC - 72
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491