Stem-loop sme-mir-79

Accession

MI0005153

Description

Schmidtea mediterranea sme-mir-79 precursor miRNA

Sequence

uugaaacauaaucucuUCUUUGGUCAUCUGGCUUUGUGAuagagaaauuaucaucGUAAAGCUAAAUUACCAAAGUGCuagaaaauguuggau
....(((((..(((...(((((((.((.((((((((((((.((.......)))))))))))))).)).)))))))....)))..)))))....

Structure

uuga     aa   -cuU       C  C            a  ga 
    aacau  ucu    CUUUGGU AU UGGCUUUGUGAu ga  a
    |||||  |||    ||||||| || |||||||||||| ||  a
    uugua  aga    GAAACCA UA AUCGAAAUGcua cu  u
uagg     aa   uCGU       U  A            -  au 

Annotation confidence Not enough data

Genome context

Contig2219: 55762-55854 [-]

Mature sme-miR-79-5p

• Accession: MIMAT0012108
• Description: Schmidtea mediterranea sme-miR-79-5p mature miRNA
• Sequence: 17 - UCUUUGGUCAUCUGGCUUUGUGA - 39
• Evidence: experimental ; 454 [2], Illumina [2-3]

Mature sme-miR-79-3p

• Accession: MIMAT0003988
• Description: Schmidtea mediterranea sme-miR-79-3p mature miRNA
• Sequence: 56 - GUAAAGCUAAAUUACCAAAGUGC - 78
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491