Stem-loop sme-mir-2173

Accession

MI0010818

Description

Schmidtea mediterranea sme-mir-2173 precursor miRNA

Sequence

5032 reads, 69.0 reads per million, 28 experiments

acaauucuaguaaucaauggaaACAACUUGUAUAUGCAUACGUauagaaagaaaacaauaUACAUGUACAUAUAAGUUGAAUUcauuguuauaaaaucauccga
.........((((.(((((((..((((((((((.(((((..(((((............)))))))))).))))))))))..)))))))))))............

Structure

---acaauucua    u       aA          A     AC     gaaag 
            guaa caaugga  CAACUUGUAU UGCAU  GUaua     a
            |||| |||||||  |||||||||| |||||  |||||      
            uauu guuacUU  GUUGAAUAUA AUGUA  CAUau     a
agccuacuaaaa    -       AA          C     --     aacaa 

Annotation confidence High

Genome context

gb|NNSW01000044.1|: 4197593-4197696 [+]

Mature sme-miR-2173-5p

• Accession: MIMAT0012164
• Description: Schmidtea mediterranea sme-miR-2173-5p mature miRNA
• Sequence: 23 - ACAACUUGUAUAUGCAUACGU - 43
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2173-3p

• Accession: MIMAT0011274
• Description: Schmidtea mediterranea sme-miR-2173-3p mature miRNA
• Sequence: 61 - UACAUGUACAUAUAAGUUGAAUU - 83
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491