Stem-loop sme-mir-1b

Accession

MI0005129

Description

Schmidtea mediterranea sme-mir-1b precursor miRNA

Sequence

853611 reads, 18327.0 reads per million, 28 experiments

aacaacacacggGCAUAAUUCAAGAUAUUCGAUaggguuuuugguaacuaaUGGAAUGUCGUGAAUUAUGGUCUucauuguu
(((((.....((.(((((((((.(((((((.((..((((......)))).)).))))))).))))))))).))....)))))

Structure

     cacac  G         A       G  ag    uu 
aacaa     gg CAUAAUUCA GAUAUUC AU  gguu  u
|||||     || ||||||||| ||||||| ||  ||||   
uuguu     CU GUAUUAAGU CUGUAAG Ua  ucaa  g
     -acuU  G         G       G  -a    ug 

Annotation confidence High

Genome context

gb|NNSW01000241.1|: 658551-658632 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-1b

Mature sme-miR-1b-5p

• Accession: MIMAT0012091
• Description: Schmidtea mediterranea sme-miR-1b-5p mature miRNA
• Sequence: 13 - GCAUAAUUCAAGAUAUUCGAU - 33
• Evidence: experimental ; 454 [2], Illumina [2-3]

Mature sme-miR-1b-3p

• Accession: MIMAT0003961
• Description: Schmidtea mediterranea sme-miR-1b-3p mature miRNA
• Sequence: 52 - UGGAAUGUCGUGAAUUAUGGUCU - 74
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491