Stem-loop sme-mir-754c-1

Accession

MI0010777

Description

Schmidtea mediterranea sme-mir-754c-1 precursor miRNA

Sequence

1351 reads, 23.0 reads per million, 28 experiments

auuugucauccacccagcauGUUGCUUGGGGUAUUACUAUauuuauuaauauaGUUUUAUCUUCAAGCAAUAUcggagguggaauauucaaca
........(((((((.(.(((((((((((((((..((((((((....))))))))..)))).)))))))))))).).))))))..........

Structure

--auuuguca      - a c           -    UU        u 
          uccacc c g auGUUGCUUGG GGUA  ACUAUauu a
          |||||| | | ||||||||||| ||||  ||||||||  
          aggugg g c UAUAACGAACU CUAU  UGauauaa u
acaacuuaua      a g -           U    UU        u 

Annotation confidence High

Genome context

gb|NNSW01000162.1|: 1192385-1192477 [+]

Mature sme-miR-754c-5p

• Accession: MIMAT0011237
• Description: Schmidtea mediterranea sme-miR-754c-5p mature miRNA
• Sequence: 21 - GUUGCUUGGGGUAUUACUAU - 40
• Evidence: experimental ; Illumina [1-2], 454 [2]

Mature sme-miR-754c-1-3p

• Accession: MIMAT0011414
• Description: Schmidtea mediterranea sme-miR-754c-1-3p mature miRNA
• Sequence: 54 - GUUUUAUCUUCAAGCAAUAU - 73
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491