Stem-loop sme-mir-2148

Accession

MI0010764

Description

Schmidtea mediterranea sme-mir-2148 precursor miRNA

Sequence

4419 reads, 100.0 reads per million, 27 experiments

guaaguaaccaguuuaucagAGAAAUUCUGUGGUCUUGAUUguaaaugauauuaUACUGGCCCACAAAAUUUCUUUUauuaaacguuugaacuuca
(.((((.....(((((..(((((((((.(((((.((....(((((......)))))..)).))))).)))))))))...)))))......))))).

Structure

- u    -aacca     -uc         C     U  UGAU     au 
 g aagu      guuua   agAGAAAUU UGUGG CU    Uguaa  g
 | ||||      |||||   ||||||||| ||||| ||    |||||   
 c uuca      caaau   UUUCUUUAA ACACC GG    AUauu  a
a -    aguuug     uaU         A     C  --UC     au 

Annotation confidence High

Genome context

gb|NNSW01001126.1|: 81597-81692 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-2148

Mature sme-miR-2148-5p

• Accession: MIMAT0011224
• Description: Schmidtea mediterranea sme-miR-2148-5p mature miRNA
• Sequence: 21 - AGAAAUUCUGUGGUCUUGAUU - 41
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2148-3p

• Accession: MIMAT0012131
• Description: Schmidtea mediterranea sme-miR-2148-3p mature miRNA
• Sequence: 55 - UACUGGCCCACAAAAUUUCUUUU - 77
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491