Stem-loop sme-mir-1175

Accession

MI0010789

Description

Schmidtea mediterranea sme-mir-1175 precursor miRNA

Literature search

1 open access papers mention sme-mir-1175
(1 sentences)

Sequence

uauuaaaauucuaaaauGAGUGGAGAUGUUGAAAUUCAAAaaaauaauuucguuuauuuUGAGAUUCAACUCCUCCUACUaauuugggauuuucaaacu
....(((((((((((...(((((((..((((((.(((((((((((......)))).))))))).))))))..)))).)))..)))))))))))......

Structure

--uauu           auG   -    AU      A       -    aa 
      aaaauucuaaa   AGU GGAG  GUUGAA UUCAAAa aaau  u
      |||||||||||   ||| ||||  |||||| ||||||| ||||   
      uuuuaggguuu   UCA CCUC  CAACUU GAGUuuu uuug  u
ucaaac           -aa   U    CU      A       a    cu 

Annotation confidence Not enough data

Genome context

Contig3917: 32832-32930 [+]

Mature sme-miR-1175-5p

• Accession: MIMAT0012147
• Description: Schmidtea mediterranea sme-miR-1175-5p mature miRNA
• Sequence: 18 - GAGUGGAGAUGUUGAAAUUCAAA - 40
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-1175-3p

• Accession: MIMAT0011249
• Description: Schmidtea mediterranea sme-miR-1175-3p mature miRNA
• Sequence: 60 - UGAGAUUCAACUCCUCCUACU - 80
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491