Stem-loop sme-mir-8a

Accession

MI0005139

Description

Schmidtea mediterranea sme-mir-8a precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

aauGACAUCGAAUCAGACAGUUUAagacagaauuuaauaaaaucUAAUACUGUCAGGUAACGAUGCCauu
((((.(((((.(((.((((((...(((...............)))...)))))).)))..))))).))))

Structure

    A     -A   A      UUA   cagaau 
aauG CAUCG  AUC GACAGU   aga      u
|||| |||||  ||| ||||||   |||      u
uuaC GUAGC  UGG CUGUCA   Ucu      a
    C     AA   A      UAA   aaaaua 

Annotation confidence Not enough data

Genome context

Contig1018: 3846-3915 [+]

Mature sme-miR-8a-5p

• Accession: MIMAT0012099
• Description: Schmidtea mediterranea sme-miR-8a-5p mature miRNA
• Sequence: 4 - GACAUCGAAUCAGACAGUUUA - 24
• Evidence: experimental ; 454 [2], Illumina [2-3]

Mature sme-miR-8a-3p

• Accession: MIMAT0003972
• Description: Schmidtea mediterranea sme-miR-8a-3p mature miRNA
• Sequence: 45 - UAAUACUGUCAGGUAACGAUGCC - 67
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491