Stem-loop sme-mir-2177

Accession

MI0010825

Description

Schmidtea mediterranea sme-mir-2177 precursor miRNA

Sequence

aaaaaucauugcacaugauaCAAGAAAUUCAUUGGUUAAUUUCaugauuaugaAAAUGCCCAGUGAAUUUCUCGGUagaugaacaauuauucauuu
...(((.((((..(((..(((.(((((((((((((.((.((((((....)))))).)).)))))))))))))..))).)))..)))).))).....

Structure

--aaa   c    ca   ga   -A             U  A      g 
     aau auug  cau  uaC  AGAAAUUCAUUGG UA UUUCau a
     ||| ||||  |||  |||  ||||||||||||| || ||||||  
     uua uaac  gua  aUG  UCUUUAAGUGACC GU AAagua u
uuuac   u    aa   -g   GC             C  A      u 

Annotation confidence Not enough data

Genome context

Contig12516: 6806-6901 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-2177

Mature sme-miR-2177-5p

• Accession: MIMAT0012165
• Description: Schmidtea mediterranea sme-miR-2177-5p mature miRNA
• Sequence: 21 - CAAGAAAUUCAUUGGUUAAUUUC - 43
• Evidence: experimental ; Illumina [1-2]

Mature sme-miR-2177-3p

• Accession: MIMAT0011279
• Description: Schmidtea mediterranea sme-miR-2177-3p mature miRNA
• Sequence: 54 - AAAUGCCCAGUGAAUUUCUCGGU - 76
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491