Stem-loop sme-mir-124c-2

Accession

MI0010936

Description

Schmidtea mediterranea sme-mir-124c-2 precursor miRNA

Literature search

1 open access papers mention sme-mir-124c-2
(6 sentences)

Sequence

ccauuauauucaugaaGCAUUAACCCUGUUGUCUUAGAUaguuuauuacaaaacauuUAAGGCACGCGGUGAAUGCCAugugaaaugg
(((((.....((((..(((((.(((.(((.(((((((((.((((......)))))))))))))))).))).)))))))))...)))))

Structure

     auauu    aa     A   C   U         a    au 
ccauu     caug  GCAUU ACC UGU GUCUUAGAU guuu  u
|||||     ||||  ||||| ||| ||| ||||||||| ||||   
gguaa     guAC  CGUAA UGG GCA CGGAAUuua caaa  a
     --agu    --     G   C   -         -    ac 

Annotation confidence Not enough data

Genome context

Contig8879: 8243-8330 [+]

Mature sme-miR-124c-3p

• Accession: MIMAT0003995
• Description: Schmidtea mediterranea sme-miR-124c-3p mature miRNA
• Sequence: 58 - UAAGGCACGCGGUGAAUGCCA - 78
• Evidence: experimental ; Illumina [1-2], 454 [2]

Mature sme-miR-124c-2-5p

• Accession: MIMAT0013778
• Description: Schmidtea mediterranea sme-miR-124c-2-5p mature miRNA
• Sequence: 17 - GCAUUAACCCUGUUGUCUUAGAU - 39
• Evidence: experimental ; Illumina [1-2], 454 [2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491