Stem-loop sme-mir-2162

Accession

MI0010796

Description

Schmidtea mediterranea sme-mir-2162 precursor miRNA

Literature search

2 open access papers mention sme-mir-2162
(3 sentences)

Sequence

2803 reads, 54.0 reads per million, 28 experiments

uggcguagucuaugguguauUGUGCUUAUUUGUAUAUUGCacuguuaaucuuuugUAUUAUGCAAAUAUUCACAAUUugaccaagcuuaaacaucc
((....(((...((((..((((((..((((((((((.((((............)))).))))))))))..))))))...)))).)))....))...

Structure

---  gcgu   cua    -gu      CU          U    cuguu 
   ug    agu   uggu   auUGUG  UAUUUGUAUA UGCa     a
   ||    |||   ||||   ||||||  |||||||||| ||||      
   ac    ucg   acca   UAACAC  AUAAACGUAU AUgu     a
ccu  aaau   --a    guU      UU          U    uuucu 

Annotation confidence High

Genome context

gb|NNSW01000017.1|: 2221541-2221636 [+]

Mature sme-miR-2162-5p

• Accession: MIMAT0011256
• Description: Schmidtea mediterranea sme-miR-2162-5p mature miRNA
• Sequence: 21 - UGUGCUUAUUUGUAUAUUGC - 40
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2162-3p

• Accession: MIMAT0012153
• Description: Schmidtea mediterranea sme-miR-2162-3p mature miRNA
• Sequence: 56 - UAUUAUGCAAAUAUUCACAAUU - 77
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491