Stem-loop sme-mir-87d

Accession

MI0010775

Description

Schmidtea mediterranea sme-mir-87d precursor miRNA

Sequence

80731 reads, 1523.0 reads per million, 28 experiments

uuacauuguuuuagaauuauaAUGUCUUAUAUUUUGCUAUUAUCauuguuucaaugaaaaugGUGAGCAAAGUUUAAGACAUUCauauuuugaaauuuucuuccu
.......((((((((((...(((((((((.((((((((((((((((((...))))))...)))).)))))))).)))))))))...)))))))))).........

Structure

--uuacauu          uau         U        -    ---      u 
         guuuuagaau   aAUGUCUUA AUUUUGCU AUUA   UCauug  
         ||||||||||   ||||||||| |||||||| ||||   |||||| u
         uaaaguuuua   UUACAGAAU UGAAACGA UGgu   aguaac  
uccuucuuu          uaC         U        G    aaa      u 

Annotation confidence High

Genome context

gb|NNSW01001696.1|: 50845-50949 [+]

Mature sme-miR-87d-5p

• Accession: MIMAT0012136
• Description: Schmidtea mediterranea sme-miR-87d-5p mature miRNA
• Sequence: 22 - AUGUCUUAUAUUUUGCUAUUAUC - 44
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-87d-3p

• Accession: MIMAT0011235
• Description: Schmidtea mediterranea sme-miR-87d-3p mature miRNA
• Sequence: 63 - GUGAGCAAAGUUUAAGACAUUC - 84
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491