Stem-loop sme-mir-747

Accession

MI0005166

Description

Schmidtea mediterranea sme-mir-747 precursor miRNA

Sequence

ucaguucuguucaUAAUCUCAUCUGGUAAUUGAAGUgaucuauuuuuuaaaaaaagaaaCUUCAUUAUCAUUUCAGAUUGUAaucgaaauga
(((.(((.(((.(((((((.(..(((((((.(((((..(((.((((...)))).))).))))))))))))..).)))))))))).))).)))

Structure

   g   u   c       C UC       U     ga   a    u 
uca uuc guu aUAAUCU A  UGGUAAU GAAGU  ucu uuuu  
||| ||| ||| ||||||| |  ||||||| |||||  ||| |||| u
agu aag uaA UGUUAGA U  ACUAUUA CUUCa  aga aaaa  
   a   c   -       C UU       -     -a   a    a 

Annotation confidence Not enough data

Genome context

Contig1616: 21999-22090 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-747

Mature sme-miR-747-5p

• Accession: MIMAT0004005
• Description: Schmidtea mediterranea sme-miR-747-5p mature miRNA
• Sequence: 14 - UAAUCUCAUCUGGUAAUUGAAGU - 36
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2-3]

Mature sme-miR-747-3p

• Accession: MIMAT0012117
• Description: Schmidtea mediterranea sme-miR-747-3p mature miRNA
• Sequence: 60 - CUUCAUUAUCAUUUCAGAUUGUA - 82
• Evidence: experimental ; 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491