Stem-loop sme-mir-10a

Accession

MI0010763

Description

Schmidtea mediterranea sme-mir-10a precursor miRNA

Literature search

1 open access papers mention sme-mir-10a
(1 sentences)

Sequence

2028406 reads, 36313.0 reads per million, 28 experiments

uaauuuguuuccuugauauaAACCCUGUAGAUCCGAGUUAGAUGGuuuuuccAAUUCGAAUCUCGGGGAAUUauauuaaugagauuaucuucu
......(((((.(((((((((.(((((.((((.((((((.((.......)).)))))).)))))))))..))))))))).)))))........

Structure

--uaauuu     c         -A     U    C      A  UG 
        guuuc uugauauaA  CCCUG AGAU CGAGUU GA  G
        ||||| |||||||||  ||||| |||| |||||| ||  u
        uagag aauuauaUU  GGGGC UCUA GCUUAA cu  u
ucuucuau     u         AA     -    A      c  uu 

Annotation confidence High

Genome context

gb|NNSW01000001.1|: 11242762-11242854 [+]

Mature sme-miR-10a-5p

• Accession: MIMAT0011223
• Description: Schmidtea mediterranea sme-miR-10a-5p mature miRNA
• Sequence: 21 - AACCCUGUAGAUCCGAGUUAGAUGG - 45
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-10a-3p

• Accession: MIMAT0012130
• Description: Schmidtea mediterranea sme-miR-10a-3p mature miRNA
• Sequence: 53 - AAUUCGAAUCUCGGGGAAUU - 72
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491