Stem-loop sme-mir-2168

Accession

MI0010807

Description

Schmidtea mediterranea sme-mir-2168 precursor miRNA

Sequence

1347 reads, 26.0 reads per million, 28 experiments

augccagaaauucugaugCCAUAUUCGUUAAGGUUGUAACCagacacuuugguCACAACCUUUGACGAAUGAGGAGUcauuuuugguaaaucau
.(((((((((...((((.((.((((((((((((((((.((((((...)))))).)))))).)))))))))).)).)))))))))))))......

Structure

-----a         uuc    g  A          -      A      c 
      ugccagaaa   ugau CC UAUUCGUUAA GGUUGU ACCaga  
      |||||||||   |||| || |||||||||| |||||| |||||| a
      augguuuuu   acUG GG GUAAGCAGUU CCAACA ugguuu  
uacuaa         ---    A  A          U      C      c 

Annotation confidence Medium

Genome context

gb|NNSW01000232.1|: 425134-425227 [-]

Mature sme-miR-2168-5p

• Accession: MIMAT0011266
• Description: Schmidtea mediterranea sme-miR-2168-5p mature miRNA
• Sequence: 19 - CCAUAUUCGUUAAGGUUGUAACC - 41
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2168-3p

• Accession: MIMAT0012160
• Description: Schmidtea mediterranea sme-miR-2168-3p mature miRNA
• Sequence: 54 - CACAACCUUUGACGAAUGAGGAGU - 77
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491