Stem-loop sme-mir-2159

Accession

MI0010792

Description

Schmidtea mediterranea sme-mir-2159 precursor miRNA

Sequence

12302 reads, 223.0 reads per million, 28 experiments

aaugcaaaugaauucaaaacUGCCUUUUCUUUGAGUAGCUguccgcagacaggugGAGCUGCCAAAUAAAGGGUgauuuggaauucauucaucguaa
......(((((((((.(((.((((((((.((((.(((((..(((((......)))))))))))))).)))))))).))).)))))))))........

Structure

--aaugca         a   c        C    A     Ug     ag 
        aaugaauuc aaa UGCCUUUU UUUG GUAGC  uccgc  a
        ||||||||| ||| |||||||| |||| |||||  |||||   
        uuacuuaag uuu gUGGGAAA AAAC CGUCG  AGgug  c
aaugcuac         g   a        U    -     --     ga 

Annotation confidence Medium

Genome context

gb|NNSW01000024.1|: 706615-706711 [-]

Mature sme-miR-2159-5p

• Accession: MIMAT0011252
• Description: Schmidtea mediterranea sme-miR-2159-5p mature miRNA
• Sequence: 21 - UGCCUUUUCUUUGAGUAGCU - 40
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2159-3p

• Accession: MIMAT0012150
• Description: Schmidtea mediterranea sme-miR-2159-3p mature miRNA
• Sequence: 56 - GAGCUGCCAAAUAAAGGGU - 74
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491