Stem-loop sme-mir-2164

Accession

MI0010800

Description

Schmidtea mediterranea sme-mir-2164 precursor miRNA

Literature search

1 open access papers mention sme-mir-2164
(1 sentences)

Sequence

6759 reads, 123.0 reads per million, 28 experiments

ccauauucagguaauaaaauUAUAUUUGAUUCACGUAGAGauugagaucuaucUUGUGCGUGAUAUCAAGUAUAAUaauguucugacucuucaucu
......(((((..(((..((((((((((((((((((((((((........))))).))))))).))))))))))))..))))))))..........

Structure

----ccauau     ua   aa            -       -     uga 
          ucagg  aua  auUAUAUUUGAU UCACGUA GAGau   g
          |||||  |||  |||||||||||| ||||||| |||||    
          agucu  ugu  UAAUAUGAACUA AGUGCGU UUcua   a
ucuacuucuc     --   aa            U       G     ucu 

Annotation confidence High

Genome context

gb|NNSW01001036.1|: 51679-51774 [+]

Mature sme-miR-2164-5p

• Accession: MIMAT0012156
• Description: Schmidtea mediterranea sme-miR-2164-5p mature miRNA
• Sequence: 21 - UAUAUUUGAUUCACGUAGAG - 40
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2164-3p

• Accession: MIMAT0011259
• Description: Schmidtea mediterranea sme-miR-2164-3p mature miRNA
• Sequence: 54 - UUGUGCGUGAUAUCAAGUAUAAU - 76
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491