Stem-loop sme-mir-2164

Accession

MI0010800

Description

Schmidtea mediterranea sme-mir-2164 precursor miRNA

Sequence

ccauauucagguaauaaaaUUAUAUUUGAUUCACGUAGAGAuugagaucuaucUUGUGCGUGAUAUCAAGUAUAAUaauguucugacucuucaucu
......(((((..(((..((((((((((((((((((((((((........))))).))))))).))))))))))))..))))))))..........

Structure

----ccauau     ua   aa            -       -     uga 
          ucagg  aua  aUUAUAUUUGAU UCACGUA GAGAu   g
          |||||  |||  |||||||||||| ||||||| |||||    
          agucu  ugu  UAAUAUGAACUA AGUGCGU UUcua   a
ucuacuucuc     --   aa            U       G     ucu 

Annotation confidence Not enough data

Genome context

Contig13809: 14673-14768 [+]

Mature sme-miR-2164-5p

• Accession: MIMAT0012156
• Description: Schmidtea mediterranea sme-miR-2164-5p mature miRNA
• Sequence: 20 - UUAUAUUUGAUUCACGUAGAGA - 41
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2164-3p

• Accession: MIMAT0011259
• Description: Schmidtea mediterranea sme-miR-2164-3p mature miRNA
• Sequence: 54 - UUGUGCGUGAUAUCAAGUAUAAU - 76
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491