Stem-loop sme-mir-87a

Accession

MI0005154

Description

Schmidtea mediterranea sme-mir-87a precursor miRNA

Sequence

34705 reads, 657.0 reads per million, 28 experiments

uuugccaguauuucaACACUUGGUAAUUUGCUCAAACCaauguccgaaaaggagucugGUGAGCAAAGUUUCAAGUGUAUauauguggcauuaaa
..(((((((((....((((((((...(((((((..((((...(((.....)))...)))))))))))...))))))))..)))).))))).....

Structure

---uu     -    uuca        UAA       AA    aug   g 
     ugcca guau    ACACUUGG   UUUGCUC  ACCa   ucc a
     ||||| ||||    ||||||||   |||||||  ||||   ||| a
     acggu uaua    UGUGAACU   AAACGAG  UGgu   agg a
aaauu     g    --UA        UUG       --    cug   a 

Annotation confidence High

Genome context

gb|NNSW01000072.1|: 3052471-3052565 [-]

Mature sme-miR-87a-5p

• Accession: MIMAT0012109
• Description: Schmidtea mediterranea sme-miR-87a-5p mature miRNA
• Sequence: 16 - ACACUUGGUAAUUUGCUCAAACC - 38
• Evidence: experimental ; 454 [2], Illumina [2-3]

Mature sme-miR-87a-3p

• Accession: MIMAT0003989
• Description: Schmidtea mediterranea sme-miR-87a-3p mature miRNA
• Sequence: 59 - GUGAGCAAAGUUUCAAGUGUAU - 80
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491