Stem-loop sme-mir-2169

Accession

MI0010808

Description

Schmidtea mediterranea sme-mir-2169 precursor miRNA

Literature search

0 open access papers mention sme-mir-2169
(0 sentences)

Sequence

1815 reads, 27.0 reads per million, 28 experiments

gaauuuuuuaucacucuaacAACUUUGAAAUUCGAUCUGAUauaaaauauuaUAAGCUCGAUAUUUAAAGUGGUUuucgugauauuuuucgucc
(((.....((((((...(((.((((((((..((((.((.(((........))).)).))))..)))))))).)))...))))))...)))....

Structure

----   uuuuu      ucu   A        AU    U  G   uaa 
    gaa     uaucac   aac ACUUUGAA  UCGA CU AUa   a
    |||     ||||||   ||| ||||||||  |||| || |||    
    cuu     auagug   UUG UGAAAUUU  AGCU GA Uau   a
ccug   --uuu      cuu   G        AU    C  A   uau 

Annotation confidence High

Genome context

gb|NNSW01000073.1|: 1419110-1419203 [+]

Mature sme-miR-2169-5p

• Accession: MIMAT0011267
• Description: Schmidtea mediterranea sme-miR-2169-5p mature miRNA
• Sequence: 21 - AACUUUGAAAUUCGAUCUGAU - 41
• Evidence: experimental ; Illumina [1-2]

Mature sme-miR-2169-3p

• Accession: MIMAT0012161
• Description: Schmidtea mediterranea sme-miR-2169-3p mature miRNA
• Sequence: 53 - UAAGCUCGAUAUUUAAAGUGGUU - 75
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491