Stem-loop sme-mir-8b

Accession

MI0010780

Description

Schmidtea mediterranea sme-mir-8b precursor miRNA

Sequence

ugcauucauucuaauaauuuGCUUCUUACUUGAUGGUAAGAGAcagauuuuuguuUAAUACUGUCAGGUAAGAAUACUgacuauuagaauuaucuucg
.......(((((((((.((...((((((((((((((((..((((((....))))))..))))))))))))))))....)).)))))))))........

Structure

-ugcauuc         a  -uGC                AG      a 
        auucuaaua uu    UUCUUACUUGAUGGUA  AGAcag u
        ||||||||| ||    ||||||||||||||||  ||||||  
        uaagauuau ag    AAGAAUGGACUGUCAU  Uuuguu u
gcuucuau         c  UCAU                AA      u 

Annotation confidence Not enough data

Genome context

Contig2498: 379-476 [+]

Mature sme-miR-8b-5p

• Accession: MIMAT0012139
• Description: Schmidtea mediterranea sme-miR-8b-5p mature miRNA
• Sequence: 21 - GCUUCUUACUUGAUGGUAAGAGA - 43
• Evidence: experimental ; Illumina [1-2]

Mature sme-miR-8b-3p

• Accession: MIMAT0011240
• Description: Schmidtea mediterranea sme-miR-8b-3p mature miRNA
• Sequence: 56 - UAAUACUGUCAGGUAAGAAUACU - 78
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491