Stem-loop sme-mir-8b

Accession

MI0010780

Description

Schmidtea mediterranea sme-mir-8b precursor miRNA

Literature search

2 open access papers mention sme-mir-8b
(17 sentences)

Sequence

323243 reads, 6761.0 reads per million, 28 experiments

ugcauucauucuaauaauuuGCUUCUUACUUGAUGGUAAGAGAcagauuuuuguuUAAUACUGUCAGGUAAGAAUACUgacuauuagaauuaucuucg
.......(((((((((.((...((((((((((((((((..((((((....))))))..))))))))))))))))....)).)))))))))........

Structure

-ugcauuc         a  -uGC                AG      a 
        auucuaaua uu    UUCUUACUUGAUGGUA  AGAcag u
        ||||||||| ||    ||||||||||||||||  ||||||  
        uaagauuau ag    AAGAAUGGACUGUCAU  Uuuguu u
gcuucuau         c  UCAU                AA      u 

Annotation confidence Medium

Genome context

gb|NNSW01000077.1|: 1841758-1841855 [+]

Mature sme-miR-8b-5p

• Accession: MIMAT0012139
• Description: Schmidtea mediterranea sme-miR-8b-5p mature miRNA
• Sequence: 21 - GCUUCUUACUUGAUGGUAAGAGA - 43
• Evidence: experimental ; Illumina [1-2]

Mature sme-miR-8b-3p

• Accession: MIMAT0011240
• Description: Schmidtea mediterranea sme-miR-8b-3p mature miRNA
• Sequence: 56 - UAAUACUGUCAGGUAAGAAUACU - 78
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491