Stem-loop sme-mir-133b

Accession

MI0005162

Description

Schmidtea mediterranea sme-mir-133b precursor miRNA

Sequence

3670 reads, 72.0 reads per million, 28 experiments

aaaacacuuuuguauuuGCUGCUAGAUGGUGAAUCAAAAccguuugggucUUGGUCCCCAUCAACCAGCAauuuucaaguguuuauc
.((((((((......((((((...(((((.(.(((((.(((.....))).))))).))))))...)))))).....))))))))...

Structure

--a        uuguau      CUA     U A     A   g 
   aaacacuu      uuGCUG   GAUGG G AUCAA Acc u
   ||||||||      ||||||   ||||| | ||||| ||| u
   uuugugaa      aACGAC   CUACC C UGGUU ugg u
cua        -cuuuu      CAA     - C     c   g 

Annotation confidence High

Genome context

gb|NNSW01000154.1|: 718563-718649 [+]

Mature sme-miR-133b-5p

• Accession: MIMAT0012115
• Description: Schmidtea mediterranea sme-miR-133b-5p mature miRNA
• Sequence: 18 - GCUGCUAGAUGGUGAAUCAAAA - 39
• Evidence: experimental ; Illumina [2]

Mature sme-miR-133b-3p

• Accession: MIMAT0003999
• Description: Schmidtea mediterranea sme-miR-133b-3p mature miRNA
• Sequence: 51 - UUGGUCCCCAUCAACCAGCA - 70
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491