Stem-loop sme-mir-754c-2

Accession

MI0010946

Description

Schmidtea mediterranea sme-mir-754c-2 precursor miRNA

Sequence

1251 reads, 22.0 reads per million, 28 experiments

auccacccagcauGUUGCUUGGGGUAUUACUAUAUuuauuaauaUAGUUUUAUCUUCAUGCAAUAUcagagguggaau
.(((((((.(.(((((((.(((((((..((((((((....))))))))..)))).))).)))))))).).))))))..

Structure

-a      - a c       U   -    UU        u 
  uccacc c g auGUUGC UGG GGUA  ACUAUAUu a
  |||||| | | ||||||| ||| ||||  ||||||||  
  aggugg g c UAUAACG ACU CUAU  UGAUauaa u
ua      a a -       U   U    UU        u 

Annotation confidence Medium

Genome context

gb|NNSW01000325.1|: 186555-186632 [-]

Mature sme-miR-754c-5p

• Accession: MIMAT0011237
• Description: Schmidtea mediterranea sme-miR-754c-5p mature miRNA
• Sequence: 14 - GUUGCUUGGGGUAUUACUAUAU - 35
• Evidence: experimental ; Illumina [1-2], 454 [2]

Mature sme-miR-754c-2-3p

• Accession: MIMAT0013775
• Description: Schmidtea mediterranea sme-miR-754c-2-3p mature miRNA
• Sequence: 45 - UAGUUUUAUCUUCAUGCAAUAU - 66
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491