Stem-loop sme-mir-61b

Accession

MI0010767

Description

Schmidtea mediterranea sme-mir-61b precursor miRNA

Sequence

caaagcggcgauuacacagAAGAUCGUGUCGUUCUAGAUUAcauggauauaugUGACUAGAAUGUUCACCUUCUUUaguagaauccgcgaucaucu
....((((...((((...(((((..(((.((((((((.(((((((....)))))))))))))))..)))..))))).))))...))))........

Structure

----caaa    cga    aca     UC   -U        A       g 
        gcgg   uuac   gAAGA  GUG  CGUUCUAG UUAcaug a
        ||||   ||||   |||||  |||  |||||||| |||||||  
        cgcc   gaug   UUUCU  CAC  GUAAGAUC AGUguau u
ucuacuag    uaa    --a     UC   UU        -       a 

Annotation confidence Not enough data

Genome context

Contig3451: 4512-4607 [+]

Mature sme-miR-61b-5p

• Accession: MIMAT0012132
• Description: Schmidtea mediterranea sme-miR-61b-5p mature miRNA
• Sequence: 20 - AAGAUCGUGUCGUUCUAGAUUA - 41
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-61b-3p

• Accession: MIMAT0011227
• Description: Schmidtea mediterranea sme-miR-61b-3p mature miRNA
• Sequence: 54 - UGACUAGAAUGUUCACCUUCUUU - 76
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491