Stem-loop sme-mir-2165

Accession

MI0010801

Description

Schmidtea mediterranea sme-mir-2165 precursor miRNA

Sequence

29246 reads, 573.0 reads per million, 28 experiments

aaacuuuauaugaauccgauCAUUCUACAGGAUCGAAUCAGUUuguaaauuuguaaacuaucucuucaacUAAUUCGAUUCUUUAGAGUAUUUGauuucauuuuauuccucg
.........(((((..(((..((((((.((((((((((.((((........................)))).)))))))))).))))))..)))..)))))...........

Structure

--aaacuuuau     uc   uC      C          C    uguaaauuugu 
           augaa  cga  AUUCUA AGGAUCGAAU AGUU           a
           |||||  |||  |||||| |||||||||| ||||            
           uacuu  GUU  UGAGAU UCUUAGCUUA Ucaa           a
gcuccuuauuu     ua   UA      U          A    cuucucuauca 

Annotation confidence High

Genome context

gb|NNSW01000069.1|: 1193059-1193170 [-]

Mature sme-miR-2165-5p

• Accession: MIMAT0012157
• Description: Schmidtea mediterranea sme-miR-2165-5p mature miRNA
• Sequence: 21 - CAUUCUACAGGAUCGAAUCAGUU - 43
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2165-3p

• Accession: MIMAT0011260
• Description: Schmidtea mediterranea sme-miR-2165-3p mature miRNA
• Sequence: 71 - UAAUUCGAUUCUUUAGAGUAUUUG - 94
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491