Stem-loop sme-mir-124d

Accession

MI0010778

Description

Schmidtea mediterranea sme-mir-124d precursor miRNA

Literature search

1 open access papers mention sme-mir-124d
(5 sentences)

Sequence

974 reads, 25.0 reads per million, 28 experiments

uuggaauauguuuuaauaaaACAUUUACAAGCGAGCCUUAAUuagaauucaauUAAGGCACGCGGUAAGUGGGUUGuugaaauuccuaucaucu
..(((....((((((((((..(((((((..(((.(((((((((.......))))))))).))).)))))))..)))))))))))))........

Structure

------uu   auau          aA       AA   A         ag 
        gga    guuuuaauaa  CAUUUAC  GCG GCCUUAAUu  a
        |||    ||||||||||  |||||||  ||| |||||||||  a
        ccu    uaaaguuGUU  GUGAAUG  CGC CGGAAUuaa  u
ucuacuau   ----          GG       -G   A         cu 

Annotation confidence High

Genome context

gb|NNSW01000504.1|: 62019-62112 [-]

Mature sme-miR-124d-5p

• Accession: MIMAT0012137
• Description: Schmidtea mediterranea sme-miR-124d-5p mature miRNA
• Sequence: 21 - ACAUUUACAAGCGAGCCUUAAU - 42
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-124d-3p

• Accession: MIMAT0011238
• Description: Schmidtea mediterranea sme-miR-124d-3p mature miRNA
• Sequence: 54 - UAAGGCACGCGGUAAGUGGGUUG - 76
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491