Stem-loop sme-mir-133a

Accession

MI0010799

Description

Schmidtea mediterranea sme-mir-133a precursor miRNA

Sequence

94626 reads, 1327.0 reads per million, 28 experiments

aaucgcaguauauuuauagcAGCUGUUGACGAAGUAUCAAAAUaguuaaaugaugauauaaauuauUUGGUCCCCGUCAACCAGCUGUUauaauguacauuaacaucc
.......(((((((.((((((((((((((((..(.((((((.(((((.............))))))))))))..)))))).)))))))))))))))))..........

Structure

---aaucgca       u          -      AA U      A     aaaug 
          guauauu auagcAGCUG UUGACG  G AUCAAA Uaguu     a
          ||||||| |||||||||| ||||||  | |||||| |||||     u
          cauguaa uaUUGUCGAC AACUGC  C UGGUUu auuaa     g
ccuacaauua       -          C      CC -      -     auaua 

Annotation confidence High

Genome context

gb|NNSW01000875.1|: 55387-55494 [+]

Mature sme-miR-133a-5p

• Accession: MIMAT0012155
• Description: Schmidtea mediterranea sme-miR-133a-5p mature miRNA
• Sequence: 21 - AGCUGUUGACGAAGUAUCAAAAU - 43
• Evidence: experimental ; Illumina [1-2]

Mature sme-miR-133a-3p

• Accession: MIMAT0011258
• Description: Schmidtea mediterranea sme-miR-133a-3p mature miRNA
• Sequence: 67 - UUGGUCCCCGUCAACCAGCUGUU - 89
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491