Stem-loop sme-mir-190b

Accession

MI0005165

Description

Schmidtea mediterranea sme-mir-190b precursor miRNA

Sequence

gcacuucaaaucgUGAUAUGUUUGGUUUAUUGGUGAguguaaacugauuucuaacACCAUUAGCCUAAUGUAUCGUGUcauugagugc
((((((.....(((((((((((.((((...((((((((....))).........)))))..)))).))))))))))).....))))))

Structure

      caaau           U    UAU     ---------   g 
gcacuu     cgUGAUAUGUU GGUU   UGGUG         Agu u
||||||     ||||||||||| ||||   |||||         |||  
cgugag     GUGCUAUGUAA CCGA   ACCAc         uca a
      uuacU           U    -UU     aaucuuuag   a 

Annotation confidence Not enough data

Genome context

Contig258: 85956-86043 [+]

Mature sme-miR-190b-5p

• Accession: MIMAT0004003
• Description: Schmidtea mediterranea sme-miR-190b-5p mature miRNA
• Sequence: 14 - UGAUAUGUUUGGUUUAUUGGUGA - 36
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2-3]

Mature sme-miR-190b-3p

• Accession: MIMAT0004004
• Description: Schmidtea mediterranea sme-miR-190b-3p mature miRNA
• Sequence: 56 - ACCAUUAGCCUAAUGUAUCGUGU - 78
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491