Stem-loop sme-mir-2149

Accession

MI0010769

Description

Schmidtea mediterranea sme-mir-2149 precursor miRNA

Sequence

11550 reads, 250.0 reads per million, 28 experiments

gcagaagaucaaaugaguaCCGCCAAUGACAAACUGUUGAUgaagacuuugucacaauuaUCAGCAGUUGUCCAUUGACguuauuuaccuucguuuucaucg
...((((((....((((((.((.(((((((((.((((((((((.(((...)))....)))))))))))))).))))).)).)))))).....))))))....

Structure

-gca      -caaa      C  C     -    A          ---a   u 
    gaagau     ugagua CG CAAUG ACAA CUGUUGAUga    gac  
    ||||||     |||||| || ||||| |||| ||||||||||    ||| u
    cuuuug     auuuau gC GUUAC UGUU GACGACUauu    cug  
gcua      cuucc      u  A     C    -          aaca   u 

Annotation confidence Medium

Genome context

gb|NNSW01000053.1|: 1164847-1164948 [-]

Mature sme-miR-2149-5p

• Accession: MIMAT0011229
• Description: Schmidtea mediterranea sme-miR-2149-5p mature miRNA
• Sequence: 20 - CCGCCAAUGACAAACUGUUGAU - 41
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2149-3p

• Accession: MIMAT0012134
• Description: Schmidtea mediterranea sme-miR-2149-3p mature miRNA
• Sequence: 61 - UCAGCAGUUGUCCAUUGAC - 79
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491