Stem-loop sme-mir-2206

Accession

MI0010939

Description

Schmidtea mediterranea sme-mir-2206 precursor miRNA

Sequence

18906 reads, 411.0 reads per million, 28 experiments

cAGGGCAGGCAUAGCUAAGUGguuacuucucacuggaaaauggauuucuaaucauUUGACCACUGGUGCGAUCCUGCCUUuuac
.((((((((.((.((..((((((((........((((((.....))))))......))))))))...)).))))))))))....

Structure

---c        C  A  -UA        cuucucac      a 
    AGGGCAGG AU GC   AGUGguua        uggaaa u
    |||||||| || ||   ||||||||        |||||| g
    UUCCGUCC UA CG   UCACCAGU        aucuuu g
cauu        -  G  UGG        --Uuacua      a 

Annotation confidence Medium

Genome context

gb|NNSW01000077.1|: 712656-712739 [+]

Mature sme-miR-2206-5p

• Accession: MIMAT0011402
• Description: Schmidtea mediterranea sme-miR-2206-5p mature miRNA
• Sequence: 2 - AGGGCAGGCAUAGCUAAGUG - 21
• Evidence: experimental ; Illumina [1]

Mature sme-miR-2206-3p

• Accession: MIMAT0011403
• Description: Schmidtea mediterranea sme-miR-2206-3p mature miRNA
• Sequence: 56 - UUGACCACUGGUGCGAUCCUGCCUU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491