Stem-loop sme-mir-2156a

Accession

MI0010786

Description

Schmidtea mediterranea sme-mir-2156a precursor miRNA

Literature search

1 open access papers mention sme-mir-2156a
(1 sentences)

Sequence

191533 reads, 3940.0 reads per million, 28 experiments

uuuuucaagucaugaaaauaaAAAGUUUUGGGUCAUAACAUAaauaauuuuaauaUCUUACGGCCCCUAAACUUUUCAUuuuucaagauucuacagca
.......((((.((((((..((((((((.(((((.(((.(((...........))).))).)))))..))))))))...)))))).))))........

Structure

-uuuuuca    a      -ua        -U     A   C   aaua 
        aguc ugaaaa   aAAAGUUU  GGGUC UAA AUA    a
        |||| ||||||   ||||||||  ||||| ||| |||    u
        uuag acuuuu   UUUUCAAA  CCCGG AUU Uau    u
acgacauc    a      UAC        UC     C   C   aauu 

Annotation confidence High

Genome context

gb|NNSW01000056.1|: 2151288-2151385 [+]

Mature sme-miR-2156a-5p

• Accession: MIMAT0012144
• Description: Schmidtea mediterranea sme-miR-2156a-5p mature miRNA
• Sequence: 22 - AAAGUUUUGGGUCAUAACAUA - 42
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2156a-3p

• Accession: MIMAT0011246
• Description: Schmidtea mediterranea sme-miR-2156a-3p mature miRNA
• Sequence: 56 - UCUUACGGCCCCUAAACUUUUCAU - 79
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491