Stem-loop sme-mir-2205

Accession

MI0010942

Description

Schmidtea mediterranea sme-mir-2205 precursor miRNA

Sequence

ccucuuaguuguguUGGAUAGUGAGUAAAGCGGUGAuaguuucaacaucaaUCUGUAUUUCUCAUCUUCCCAcgaucgauuaau
....((((((((((.(((..(((((.((.((((((((.((....))))))..)))).)).)))))..))).)))..))))))).

Structure

ccuc       --   U   UA     U  A    --    a  u 
    uuaguug  ugu GGA  GUGAG AA GCGG  UGAu gu u
    |||||||  ||| |||  ||||| || ||||  |||| ||  
    aauuagc  gcA CCU  UACUC UU UGUC  acua ca c
---u       ua   C   UC     U  A    Ua    -  a 

Annotation confidence Not enough data

Genome context

Contig5365: 28923-29006 [-]

Mature sme-miR-2205-5p

• Accession: MIMAT0011408
• Description: Schmidtea mediterranea sme-miR-2205-5p mature miRNA
• Sequence: 15 - UGGAUAGUGAGUAAAGCGGUGA - 36
• Evidence: experimental ; Illumina [1]

Mature sme-miR-2205-3p

• Accession: MIMAT0011409
• Description: Schmidtea mediterranea sme-miR-2205-3p mature miRNA
• Sequence: 52 - UCUGUAUUUCUCAUCUUCCCA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491