Stem-loop sme-mir-278

Accession

MI0005171

Description

Schmidtea mediterranea sme-mir-278 precursor miRNA

Literature search

1 open access papers mention sme-mir-278
(2 sentences)

Sequence

ggucgugaucuuugacUUCGAAUGCUAUUUUCACCAGAUgcuuguucaaguucaacagucaagcUCGGUGGGAGUAACAUUCGAaauuaauuacgauc
(((((((((...(((.((((((((.((((((((((.((.(((((...............))))))))))))))))).)))))))).))))))))))))

Structure

         cuu   c        C          A  U     uucaag 
ggucgugau   uga UUCGAAUG UAUUUUCACC GA gcuug      u
|||||||||   ||| |||||||| |||||||||| || |||||      u
cuagcauua   auu aAGCUUAC AUGAGGGUGG CU cgaac      c
         ---   a        A          -  -     ugacaa 

Annotation confidence Not enough data

Genome context

Contig1271: 12661-12758 [-]

Mature sme-miR-278-5p

• Accession: MIMAT0012121
• Description: Schmidtea mediterranea sme-miR-278-5p mature miRNA
• Sequence: 17 - UUCGAAUGCUAUUUUCACCAGAU - 39
• Evidence: experimental ; 454 [2], Illumina [2-3]

Mature sme-miR-278-3p

• Accession: MIMAT0004011
• Description: Schmidtea mediterranea sme-miR-278-3p mature miRNA
• Sequence: 65 - UCGGUGGGAGUAACAUUCGA - 84
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491