Stem-loop sme-mir-87c

Accession

MI0010768

Description

Schmidtea mediterranea sme-mir-87c precursor miRNA

Sequence

273040 reads, 4804.0 reads per million, 28 experiments

guucucggcucgugucgcagUCAAUUGAUAAUGGGCCCCAGCCauuccaggcgaaugAUGAGCAAAUUAUCAAUUGACUUuccauggccauugucaucu
......(((.((((....((((((((((((((..((..((..(((((.....))))).)).))..))))))))))))))...)))))))..........

Structure

----guucuc   u    ucgc              GG  CC  GC     c 
          ggc cgug    agUCAAUUGAUAAU  GC  CA  Cauuc a
          ||| ||||    ||||||||||||||  ||  ||  ||||| g
          ccg guac    UCAGUUAACUAUUA  CG  GU  guaag g
ucuacuguua   -    -cuU              AA  -A  -A     c 

Annotation confidence High

Genome context

gb|NNSW01000019.1|: 1464517-1464615 [+]

Mature sme-miR-87c-5p

• Accession: MIMAT0012133
• Description: Schmidtea mediterranea sme-miR-87c-5p mature miRNA
• Sequence: 21 - UCAAUUGAUAAUGGGCCCCAGCC - 43
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-87c-3p

• Accession: MIMAT0011228
• Description: Schmidtea mediterranea sme-miR-87c-3p mature miRNA
• Sequence: 58 - AUGAGCAAAUUAUCAAUUGACUU - 80
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491