Stem-loop sme-mir-2151

Accession

MI0010772

Description

Schmidtea mediterranea sme-mir-2151 precursor miRNA

Sequence

ugcuuaagagaacucuuuaCAGAUCAUGUUAAGUGGAAUUUGAUaacaGAUUGCACUCAAUAUGGUCAGAUuagcuuucucucaacagca
((((..((((((..((.....(((((((((.((((.((((((....)))))).)))).))))))))).....))..))))))....))))

Structure

    --ua      cu  uuaCA         A    G      A 
ugcu    agagaa  cu     GAUCAUGUU AGUG AAUUUG U
||||    ||||||  ||     ||||||||| |||| ||||||  
acga    ucucuu  ga     CUGGUAUAA UCAC UUAGac a
    caac      uc  uUAGA         C    G      a 

Annotation confidence Not enough data

Genome context

Contig2742: 61491-61580 [+]

Mature sme-miR-2151-5p

• Accession: MIMAT0012135
• Description: Schmidtea mediterranea sme-miR-2151-5p mature miRNA
• Sequence: 20 - CAGAUCAUGUUAAGUGGAAUUUGAU - 44
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2151-3p

• Accession: MIMAT0011232
• Description: Schmidtea mediterranea sme-miR-2151-3p mature miRNA
• Sequence: 49 - GAUUGCACUCAAUAUGGUCAGAU - 71
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491