Stem-loop sme-mir-2147d

Accession

MI0010941

Description

Schmidtea mediterranea sme-mir-2147d precursor miRNA

Sequence

uugcuuuuggauguuaacauCGGAAAACUCGCACCGUGAUAUugucaacuucacaaUUUCACUGCGACUGUUCCCAUguuacuuccaguuuucggca
.((((.(((((.((.(((((.((((...(((((..((((.(((((.......))))).)))))))))...)))).))))))).))))).....))))

Structure

u    ----u     u  u     C    AAC     CC    U     ca 
 ugcu     uugga gu aacau GGAA   UCGCA  GUGA AUugu  a
 ||||     ||||| || ||||| ||||   |||||  |||| |||||  c
 acgg     gaccu ca uugUA CCUU   AGCGU  CACU Uaaca  u
-    cuuuu     u  -     C    GUC     --    U     cu 

Annotation confidence Not enough data

Genome context

Contig3339: 35249-35345 [+]

Mature sme-miR-2147d-5p

• Accession: MIMAT0011406
• Description: Schmidtea mediterranea sme-miR-2147d-5p mature miRNA
• Sequence: 21 - CGGAAAACUCGCACCGUGAUAU - 42
• Evidence: experimental ; Illumina [1]

Mature sme-miR-2147d-3p

• Accession: MIMAT0011407
• Description: Schmidtea mediterranea sme-miR-2147d-3p mature miRNA
• Sequence: 57 - UUUCACUGCGACUGUUCCCAU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491