Stem-loop sme-mir-2154-1

Accession

MI0010784

Description

Schmidtea mediterranea sme-mir-2154-1 precursor miRNA

Sequence

11197 reads, 189.0 reads per million, 28 experiments

uucgagugauuauuagaauuUCAGCUGUACAAUUGGCAUUGUGUaugauaaaugaauauauuaacACAAGUCUUUGUAUAGCUUauauuuuuuaucacuaauccacc
....((((((....(((((...((((((((((..(((.((((((.(((((........)))))))))))))).))))))))))...)))))..))))))........

Structure

----uucg      uauu     uUC          UU   A      a     aau 
        agugau    agaau   AGCUGUACAA  GGC UUGUGU ugaua   g
        ||||||    |||||   ||||||||||  ||| |||||| |||||    
        ucacua    uuuua   UCGAUAUGUU  CUG AACAca auuau   a
ccaccuaa      --uu     uaU          -U   -      -     aua 

Annotation confidence Medium

Genome context

gb|NNSW01000269.1|: 298183-298289 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from sme-mir-2154-1

Mature sme-miR-2154-5p

• Accession: MIMAT0011244
• Description: Schmidtea mediterranea sme-miR-2154-5p mature miRNA
• Sequence: 21 - UCAGCUGUACAAUUGGCAUUGUGU - 44
• Evidence: experimental ; Illumina [1-2], 454 [2]

Mature sme-miR-2154-3p

• Accession: MIMAT0011412
• Description: Schmidtea mediterranea sme-miR-2154-3p mature miRNA
• Sequence: 66 - ACAAGUCUUUGUAUAGCUU - 84
• Evidence: experimental ; Illumina [1-2], 454 [2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491