Stem-loop sme-mir-13

Accession

MI0005142

Description

Schmidtea mediterranea sme-mir-13 precursor miRNA

Sequence

GAGCCUUUGGCGGCUGUGAUAUgauaauuauauacaUAUCACAGUCAUGCUAAAGAGCuu
((((((((((((((((((((((((((....))).))))))))))))..))))))).))))

Structure

    -       --            -   a 
GAGC CUUUGGC  GGCUGUGAUAUg aua u
|||| |||||||  |||||||||||| |||  
uuCG GAAAUCG  CUGACACUAUac uau u
    A       UA            a   a 

Annotation confidence Not enough data

Genome context

Contig1374: 32236-32295 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from sme-mir-13

Mature sme-miR-13-5p

• Accession: MIMAT0012101
• Description: Schmidtea mediterranea sme-miR-13-5p mature miRNA
• Sequence: 1 - GAGCCUUUGGCGGCUGUGAUAU - 22
• Evidence: experimental ; Illumina [2-3]

Mature sme-miR-13-3p

• Accession: MIMAT0003976
• Description: Schmidtea mediterranea sme-miR-13-3p mature miRNA
• Sequence: 37 - UAUCACAGUCAUGCUAAAGAGC - 58
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491