Stem-loop sme-mir-125a

Accession

MI0005160

Description

Schmidtea mediterranea sme-mir-125a precursor miRNA

Literature search

2 open access papers mention sme-mir-125a
(2 sentences)

Sequence

cuguugucuguauuuauaUCCCUGAGACCAUUGACUGCAUuuguuugagguuucaauGUAGUUUUUGGUAUCAGGAUuguggauauggagcauuc
.(((..((((((((((((..(((((.((((..((((((((.....(((....)))))))))))..)))).)))))..)))))))))))))))...

Structure

--c   ug            UC     G    UU        uuguu   g 
   ugu  ucuguauuuaua  CCUGA ACCA  GACUGCAU     uga g
   |||  ||||||||||||  ||||| ||||  ||||||||     |||  
   acg  agguauaggugu  GGACU UGGU  UUGAUGua     acu u
cuu   --            UA     A    UU        -----   u 

Annotation confidence Not enough data

Genome context

Contig13184: 12140-12234 [-]

Mature sme-miR-125a-5p

• Accession: MIMAT0003996
• Description: Schmidtea mediterranea sme-miR-125a-5p mature miRNA
• Sequence: 19 - UCCCUGAGACCAUUGACUGCAU - 40
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

Mature sme-miR-125a-3p

• Accession: MIMAT0003997
• Description: Schmidtea mediterranea sme-miR-125a-3p mature miRNA
• Sequence: 58 - GUAGUUUUUGGUAUCAGGAU - 77
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491