Stem-loop sme-mir-216

Accession

MI0010785

Description

Schmidtea mediterranea sme-mir-216 precursor miRNA

Literature search

2 open access papers mention sme-mir-216
(3 sentences)

Sequence

43623 reads, 814.0 reads per million, 28 experiments

ccugucaugauuuagcaagCAAUCUCAGCCUGUUAAUAGGAGUuuggaaauguuuaaauacUCCUAUAACGUCUGAUGAUUACUUGucaaaucauuuuaccaa
......(((((((.(((((.((((((((..(((((.((((((((((((....)))))..)))))))))))).)))).)))).))))).)))))))........

Structure

--ccuguc       a     C    -    CC     A       --     a 
        augauuu gcaag AAUC UCAG  UGUUA UAGGAGU  uugga a
        ||||||| ||||| |||| ||||  ||||| |||||||  |||||  
        uacuaaa uGUUC UUAG AGUC  GCAAU AUCCUca  aauuu u
aaccauuu       c     A    U    -U     -       ua     g 

Annotation confidence High

Genome context

gb|NNSW01000085.1|: 414232-414334 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-216

Mature sme-miR-216-5p

• Accession: MIMAT0011245
• Description: Schmidtea mediterranea sme-miR-216-5p mature miRNA
• Sequence: 20 - CAAUCUCAGCCUGUUAAUAGGAGU - 43
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-216-3p

• Accession: MIMAT0012143
• Description: Schmidtea mediterranea sme-miR-216-3p mature miRNA
• Sequence: 62 - UCCUAUAACGUCUGAUGAUUACUUG - 86
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491